Week 30 – June 30th

I wrote my thesis this week. On Tuesday, I had a meeting with Zaid to discuss the thesis content. He help ed me defining the layout and gave me basically the chapters it should contain. On a personal note, I finished my slideshow for Ph.D application, prepared for the interview, …

Week 29 – June 24th

I implemented z-dropoff. Actually it was there from before, but I added all the pipework to specify the zdrop value. It works correctly. I did not write more of the thesis, but I’ll have a call with Zaid tomorrow to know what I have to write. I may try to …

Week 28 – June 17th

I guess I started writing my logs on Monday for some weeks now. I would have preferred to keep my habit of …

Week 27 – June 10th

This week has been somewhat tense in non-MSc related contents, because I had to pass the linguistic exams for the MEXT scholarship. …

Week 26 – June 3rd

I forgot to post last week. Lots of things happened! First, bwa-gasal2 is delivering good results! A diff comparison with the seedonly …

Week 24 – May 20th

Last week (week 23 – May 12th) I was on vacation. This week I didn’t do much to complete my Ph.D application. …

Week 22 – May 5th

THIS WEEK I FINALLY CAME UP WITH A WORKING VERSION OF BWA-GASAL2. And it was about time! I basically re-usedthe ksw_extend2 function …

Week 21 – April 29st

These last days, I tweaked all parameters from lr_dirty_cpu (the version of bwa-gasal2 with the alignment function replaced by the CPU one) …

Week 20 – April 21st

Note: this week has been a tad shortened due to Good Friday. I made two major things this week. First, I re-wrote …